BLAST Demo 2

Part of
Helix

BLAST Demo 2

This page uses the Java SStructView applet and JavaScript to search for similar sequences using the NCBI's BLAST search engine. Select a range of bases (click on a base and drag to another base), then hit the "Copy To Form" button. The selected sequence will be copied into the Sequence field. Change any other search parameters you wish, then click on "Submit".

Note: this page is based on the original BLAST search form, found here.

     Choose program to use and database to search:

     Program Database

The query sequence is filtered for low complexity regions by default.

Enter here sequence in FASTA format:

This is a Java applet displayed using the ARCHIVE tag. It requires Netscape Navigator to run.

Advanced options for the BLAST server:

Expect   Cutoff
Matrix   Strand
Filter     Histogram     NCBI-gi
Descriptions   Alignments

Other advanced options:

The BLAST server may be very busy during the weekday, resulting in delays for users. The email option allows a user to receive the results quickly in a convenient form. If the HTML option is used, the results should be loaded into a web browser for viewing.

  Send reply to the Email address:          In HTML format

The applet is linked to BLAST using JavaScript. The "Copy to Form" button's script is:

<INPUT	TYPE="button"
		VALUE="Copy To Form"
		onClick="this.form.SEQUENCE.value = document.SSApplet.getVariable('SUBSEQ-VAL')">

The HTML code to show the applet is:

<APPLET CODE="SStructView.class" ARCHIVE="SStructView.zip" NAME="SSApplet" width=400 height=300>
<PARAM name="structure-data-URL" value="http://www-smi.stanford.edu/projects/helix/sstructview/data/e.coli16s.coord">
<PARAM name="show-controls" value="true">
</APPLET>

Demo : Up

Last modified by RMF at 19:06 PM on 08/15/1997.