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Helix

BLAST Demo 1

This page uses the Java SStructView applet to search for similar sequences using the NCBI's BLAST search engine. Select a range of bases (click on a base and drag to another base), then hit the "BLAST Search" button.
This is a Java applet displayed using the ARCHIVE tag. It requires Netscape Navigator to run.
The applet is linked to BLAST using SStructView's action-URL parameter and the <--subseq-val--> link variable. The HTML code to run this example is: 
<APPLET CODE="SStructView.class" ARCHIVE="SStructView.zip" NAME="SSApplet" WIDTH="500" HEIGHT="300" ALIGN="BOTTOM">
<PARAM name="action-URL" value="http://www.ncbi.nlm.nih.gov:80/cgi-bin/BLAST/nph-blast?PROGRAM=blastn&PATH=&DATALIB=nr&SEQUENCE=<--subseq-val-->">
<PARAM NAME="structure-data-URL" VALUE="http://smi-web.stanford.edu/projects/helix/sstructview/data/e.coli16s+.coord">
<PARAM name="action-desc" value="BLAST Search">
<PARAM NAME="initial-selection" VALUE="7,8,9,10,11,12">
<PARAM NAME="flagged-bases" VALUE="2,3,4">
<PARAM NAME="show-controls" VALUE="true">
</APPLET>
Demo : Up
Last modified by RMF at 11:22 on 08/16/1993.