<?xml version="1.0"?>

<!DOCTYPE rnaml SYSTEM "http://www-lbit.iro.umontreal.ca/rnaml/current/rnaml.dtd">
<rnaml version="1.1">
  <molecule id="Yeast-tRNA-Phe">
    <identity>
      <name>Saccharomyces cerevisiae tRNA-Phe</name>
      <taxonomy>
        <domain>Eukaryota</domain>
        <kingdom>Fungi</kingdom>
        <phylum>Ascomycota</phylum>
        <class>Saccharomycetes</class>
        <order>Saccharomycetales</order>
        <family>Saccharomycetaceae</family>
        <genus>Saccharomyces</genus>
        <species>Saccharomyces cerevisiae</species>
      </taxonomy>
    </identity>
    <sequence>
      <numbering-system id="natural" used-in-file="true">
        <numbering-range>
          <start>1</start>
          <end>10</end>
        </numbering-range>
        <numbering-range>
          <start>11</start>
          <length>66</length>
        </numbering-range>
      </numbering-system>
      <seq-data>
	  GCGGAUUUAG CUCAGUUGGG AGAGCGCCAG ACUGAAGAUC UGGAGGUCCU GUGUUCGAUC
          CACAGAAUUC GCACCA
	</seq-data>
      <seq-annotation comment="Annotations done by hand!">
        <modification>
          <base-id>
            <position>10</position>
          </base-id>
          <modified-type>m2g</modified-type>
        </modification>
        <modification>
          <base-id>
            <position>16</position>
          </base-id>
          <modified-type>d</modified-type>
        </modification>
        <modification>
          <base-id>
            <position>26</position>
          </base-id>
          <modified-type>m2g</modified-type>
        </modification>
        <segment>
          <seg-name>anticodon loop</seg-name>
          <base-id-5p>
            <base-id>
              <position>34</position>
            </base-id>
          </base-id-5p>
          <length>3</length>
        </segment>
        <segment>
          <seg-name>T-psi-C loop</seg-name>
          <base-id-5p>
            <base-id>
              <position>54</position>
            </base-id>
          </base-id-5p>
          <base-id-3p>
            <base-id>
              <position>61</position>
            </base-id>
          </base-id-3p>
        </segment>
      </seq-annotation>
    </sequence>
  </molecule>
  <revision comment="Created sequence example with RNAML version 1.1">
    <date>
      <day>13</day>
      <month>11</month>
      <year>2001</year>
    </date>
  </revision>
  <reference comment="Basic reference for RNAML format" id="waugh2002">
    <author>
      <person>
        <first-name>A.</first-name>
        <last-name>Waugh</last-name>
      </person>
    </author>
    <author>
      <person>
        <first-name>P.</first-name>
        <last-name>Gendron</last-name>
      </person>
    </author>
    <author>
      <person>
        <first-name>R.</first-name>
        <last-name>Altman</last-name>
      </person>
    </author>
    <author>
      <person>
        <first-name>J.W.</first-name>
        <last-name>Brown</last-name>
      </person>
    </author>
    <author>
      <person>
        <first-name>D.</first-name>
        <last-name>Case</last-name>
      </person>
    </author>
    <author>
      <person>
        <first-name>D.</first-name>
        <last-name>Gautheret</last-name>
      </person>
    </author>
    <author>
      <person>
        <first-name>S.C.</first-name>
        <last-name>Harvey</last-name>
      </person>
    </author>
    <author>
      <person>
        <first-name>N.</first-name>
        <last-name>Leontis</last-name>
      </person>
    </author>
    <author>
      <person>
        <first-name>J.</first-name>
        <last-name>Westbrook</last-name>
      </person>
    </author>
    <author>
      <person>
        <first-name>E.</first-name>
        <last-name>Westhof</last-name>
      </person>
    </author>
    <author>
      <person>
        <first-name>M.</first-name>
        <last-name>Zuker</last-name>
      </person>
    </author>
    <author>
      <person>
        <first-name>F.</first-name>
        <last-name>Major</last-name>
      </person>
    </author>
    <title>RNAML: A standard syntax for exchanging RNA information</title>
    <journal>RNA</journal>
    <volume>8</volume>
    <issue>6</issue>
    <pages>707,717</pages>
  </reference>
  <reference comment="Website for RNAML" id="gendron2001a">
    <path>
      <url>http://www-lbit.iro.umontreal.ca/rnaml/</url>
    </path>
  </reference>
</rnaml>
