Index of /pubs/bmc-sb-liu
Name Last modified Size Description
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Parent Directory 13-Dec-2011 23:21 -
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1A3C_A.loop.73_82.pdb 06-Oct-2008 12:58 74k
1A4X_A.loop.73_84.pdb 06-Oct-2008 12:58 75k
1A4X_B.loop.72_83.pdb 06-Oct-2008 12:58 75k
1A7C_A.loop.333_348.pdb 06-Oct-2008 12:58 162k
1A7J_A.loop.99_106.pdb 06-Oct-2008 12:58 123k
1ACC_A.loop.275_288.pdb 06-Oct-2008 12:58 289k
1AKM_A.loop.234_246.pdb 06-Oct-2008 12:58 139k
1ANT_I.loop.29_43.pdb 06-Oct-2008 12:58 179k
1ANT_L.loop.395_406.pdb 06-Oct-2008 12:58 173k
1APN_A.loop.15_23.pdb 06-Oct-2008 12:58 95k
1ATH_B.loop.396_405.pdb 06-Oct-2008 12:58 160k
1AVC_A.loop.323_330.pdb 06-Oct-2008 12:58 277k
1AZX_I.loop.25_39.pdb 06-Oct-2008 12:58 185k
1AZX_L.loop.25_39.pdb 06-Oct-2008 12:58 184k
1B4N_B.loop.453_462.pdb 06-Oct-2008 12:58 261k
1B7T_A.loop.199_212.pdb 06-Oct-2008 12:58 336k
1BM3_H.loop.99_111.pdb 06-Oct-2008 12:58 93k
1BPE_A.loop.63_71.pdb 06-Oct-2008 12:58 126k
1BQG_A.loop.98_111.pdb 06-Oct-2008 12:58 171k
1BR8_L.loop.395_405.pdb 06-Oct-2008 12:58 175k
1BRM_A.loop.231_243.pdb 06-Oct-2008 12:58 151k
1BRM_B.loop.231_242.pdb 06-Oct-2008 12:58 151k
1BXK_A.loop.290_300.pdb 06-Oct-2008 12:58 149k
1DBZ_A.loop.150_164.pdb 06-Oct-2008 12:58 138k
1DBZ_C.loop.154_163.pdb 06-Oct-2008 12:58 138k
1DBZ_D.loop.152_164.pdb 06-Oct-2008 12:58 138k
1DCU_D.loop.66_76.pdb 06-Oct-2008 12:58 139k
1DF0_A.loop.563_568.pdb 06-Oct-2008 12:58 272k
1DG3_A.loop.156_167.pdb 06-Oct-2008 12:58 239k
1DHK_B.loop.74_78.pdb 06-Oct-2008 12:58 84k
1DHK_B.loop.89_96.pdb 06-Oct-2008 12:58 85k
1DNK_A.loop.97_108.pdb 06-Oct-2008 12:58 110k
1E04_L.loop.27_42.pdb 06-Oct-2008 12:58 183k
1E05_I.loop.25_38.pdb 06-Oct-2008 12:58 184k
1EB7_A.loop.222_229.pdb 06-Oct-2008 12:58 133k
1EC7_D.loop.94_107.pdb 06-Oct-2008 12:58 185k
1EF8_C.loop.67_79.pdb 06-Oct-2008 12:58 110k
1EX0_A.loop.30_42.pdb 06-Oct-2008 12:58 309k
1F13_B.loop.36_41.pdb 06-Oct-2008 12:58 312k
1F2P_A.loop.198_202.pdb 06-Oct-2008 12:58 111k
1F48_A.loop.296_309.pdb 06-Oct-2008 12:58 230k
1F5N_A.loop.157_165.pdb 06-Oct-2008 12:58 250k
1FAJ_A.loop.145_149.pdb 06-Oct-2008 12:58 73k
1FCM_A.loop.280_287.pdb 06-Oct-2008 12:58 151k
1FG9_D.loop.141_148.pdb 06-Oct-2008 12:58 91k
1FIE_A.loop.29_44.pdb 06-Oct-2008 12:58 310k
1FMU_A.loop.161_166.pdb 06-Oct-2008 12:58 135k
1FO4_A.loop.531_537.pdb 06-Oct-2008 12:58 544k
1FO4_B.loop.528_537.pdb 06-Oct-2008 12:58 544k
1FX7_B.loop.140_151.pdb 06-Oct-2008 12:58 96k
1FX7_C.loop.140_151.pdb 06-Oct-2008 12:58 96k
1FX7_D.loop.140_151.pdb 06-Oct-2008 12:58 96k
1FYH_B.loop.135_147.pdb 06-Oct-2008 12:58 92k
1G18_A.loop.196_211.pdb 06-Oct-2008 12:58 131k
1G20_F.loop.186_191.pdb 06-Oct-2008 12:58 108k
1G20_G.loop.186_191.pdb 06-Oct-2008 12:58 107k
1G20_G.loop.49_55.pdb 06-Oct-2008 12:58 107k
1G57_A.loop.33_38.pdb 06-Oct-2008 12:58 84k
1G57_B.loop.33_39.pdb 06-Oct-2008 12:58 87k
1G58_A.loop.33_39.pdb 06-Oct-2008 12:58 81k
1G58_B.loop.33_39.pdb 06-Oct-2008 12:58 81k
1G5C_B.loop.12_24.pdb 06-Oct-2008 12:58 71k
1G5C_D.loop.12_24.pdb 06-Oct-2008 12:58 71k
1G5C_F.loop.10_25.pdb 06-Oct-2008 12:58 71k
1G5S_A.loop.148_163.pdb 06-Oct-2008 12:58 126k
1GEW_A.loop.17_32.pdb 06-Oct-2008 12:58 145k
1GGY_A.loop.31_43.pdb 06-Oct-2008 12:58 308k
1GIH_A.loop.149_164.pdb 06-Oct-2008 12:58 126k
1GRI_A.loop.27_34.pdb 06-Oct-2008 12:58 96k
1GXB_C.loop.79_84.pdb 06-Oct-2008 12:58 142k
1GY8_A.loop.237_249.pdb 06-Oct-2008 12:58 158k
1GY8_B.loop.235_249.pdb 06-Oct-2008 12:58 158k
1I01_C.loop.140_149.pdb 06-Oct-2008 12:58 90k
1I6I_A.loop.289_303.pdb 06-Oct-2008 12:58 147k
1II0_A.loop.296_309.pdb 06-Oct-2008 12:58 231k
1II9_A.loop.295_309.pdb 06-Oct-2008 12:58 229k
1IPW_A.loop.97_101.pdb 06-Oct-2008 12:58 73k
1J8Y_F.loop.108_113.pdb 06-Oct-2008 12:58 124k
1JAL_B.loop.108_122.pdb 06-Oct-2008 12:58 144k
1JK0_B.loop.90_100.pdb 06-Oct-2008 12:58 122k
1JRG_A.loop.214_222.pdb 06-Oct-2008 12:58 147k
1JRG_B.loop.213_225.pdb 06-Oct-2008 12:58 147k
1JV3_A.loop.56_68.pdb 06-Oct-2008 12:58 215k
1JVQ_I.loop.27_42.pdb 06-Oct-2008 12:58 183k
1K3X_A.loop.213_223.pdb 06-Oct-2008 12:58 115k
1K82_C.loop.216_225.pdb 06-Oct-2008 12:58 114k
1KCW_A.loop.338_347.pdb 06-Oct-2008 12:58 447k
1KQM_A.loop.200_213.pdb 06-Oct-2008 12:58 340k
1KT1_A.loop.63_76.pdb 06-Oct-2008 12:58 165k
1KTV_B.loop.470_476.pdb 06-Oct-2008 12:58 269k
1KV1_A.loop.170_184.pdb 06-Oct-2008 12:58 149k
1L2O_A.loop.200_211.pdb 06-Oct-2008 12:58 340k
1L3K_A.loop.91_103.pdb 06-Oct-2008 12:58 76k
1L8A_A.loop.400_414.pdb 06-Oct-2008 12:58 346k
1L8A_B.loop.400_414.pdb 06-Oct-2008 12:58 346k
1LEW_A.loop.173_183.pdb 06-Oct-2008 12:58 152k
1LJ7_A.loop.141_149.pdb 06-Oct-2008 12:58 88k
1LJ7_D.loop.139_149.pdb 06-Oct-2008 12:58 88k
1LJ7_E.loop.139_149.pdb 06-Oct-2008 12:58 88k
1LJ7_H.loop.142_149.pdb 06-Oct-2008 12:58 88k
1LJ7_I.loop.141_149.pdb 06-Oct-2008 12:58 88k
1LK6_I.loop.27_42.pdb 06-Oct-2008 12:58 183k
1LL1_A.loop.22_33.pdb 06-Oct-2008 12:58 264k
1LS1_A.loop.271_278.pdb 06-Oct-2008 12:58 122k
1M80_A.loop.308_321.pdb 06-Oct-2008 12:58 152k
1M80_B.loop.308_321.pdb 06-Oct-2008 12:58 152k
1MDX_A.loop.218_229.pdb 06-Oct-2008 12:58 155k
1MDZ_A.loop.220_232.pdb 06-Oct-2008 12:58 155k
1MO5_A.loop.196_209.pdb 06-Oct-2008 12:58 133k
1NOL_A.loop.21_30.pdb 06-Oct-2008 12:58 270k
1NQ9_I.loop.133_137.pdb 06-Oct-2008 12:58 176k
1NQ9_I.loop.26_39.pdb 06-Oct-2008 12:58 180k
1NQ9_L.loop.26_36.pdb 06-Oct-2008 12:58 182k
1NQE_A.loop.228_241.pdb 06-Oct-2008 12:58 239k
1NQG_A.loop.231_241.pdb 06-Oct-2008 12:58 249k
1NXX_A.loop.53_58.pdb 06-Oct-2008 12:58 51k
1OPL_B.loop.237_252.pdb 06-Oct-2008 12:58 165k
1OZT_G.loop.127_141.pdb 06-Oct-2008 12:58 56k
1OZT_J.loop.131_142.pdb 06-Oct-2008 12:58 57k
1OZT_K.loop.67_78.pdb 06-Oct-2008 12:58 54k
1OZT_L.loop.66_79.pdb 06-Oct-2008 12:58 56k
1P1F_B.loop.466_473.pdb 06-Oct-2008 12:58 213k
1P1Z_A.loop.103_111.pdb 06-Oct-2008 12:58 115k
1P1Z_A.loop.34_45.pdb 06-Oct-2008 12:58 117k
1P2M_C.loop.10_16.pdb 06-Oct-2008 12:58 96k
1P4A_B.loop.162_167.pdb 06-Oct-2008 12:58 113k
1PBG_A.loop.314_325.pdb 06-Oct-2008 12:58 204k
1PR3_A.loop.40_55.pdb 06-Oct-2008 12:58 153k
1PVO_A.loop.147_152.pdb 06-Oct-2008 12:58 175k
1PVO_B.loop.147_152.pdb 06-Oct-2008 12:58 153k
1PVO_C.loop.147_152.pdb 06-Oct-2008 12:58 175k
1PVO_D.loop.147_152.pdb 06-Oct-2008 12:58 175k
1PVO_E.loop.147_152.pdb 06-Oct-2008 12:58 174k
1PVO_F.loop.147_152.pdb 06-Oct-2008 12:58 175k
1PXO_A.loop.36_41.pdb 06-Oct-2008 12:58 129k
1PZ7_B.loop.32_40.pdb 06-Oct-2008 12:58 81k
1Q1Q_A.loop.95_103.pdb 06-Oct-2008 12:58 124k
1QQE_A.loop.227_237.pdb 06-Oct-2008 12:58 123k
1QVI_A.loop.200_211.pdb 06-Oct-2008 12:58 353k
1RFQ_A.loop.40_51.pdb 06-Oct-2008 12:58 156k
1RP7_A.loop.400_414.pdb 06-Oct-2008 12:58 346k
1RP7_B.loop.400_414.pdb 06-Oct-2008 12:58 346k
1RQX_D.loop.129_139.pdb 06-Oct-2008 12:58 139k
1S0F_A.loop.1150_115..> 06-Oct-2008 12:58 569k
1S1M_A.loop.427_438.pdb 06-Oct-2008 12:58 228k
1S7H_B.loop.95_101.pdb 06-Oct-2008 12:58 77k
1SL9_A.loop.122_128.pdb 06-Oct-2008 12:58 83k
1SMS_A.loop.305_315.pdb 06-Oct-2008 12:58 145k
1SMS_B.loop.305_315.pdb 06-Oct-2008 12:58 145k
1SNP_A.loop.44_51.pdb 06-Oct-2008 12:58 59k
1SNQ_A.loop.44_51.pdb 06-Oct-2008 12:58 59k
1SP3_A.loop.146_153.pdb 06-Oct-2008 12:58 186k
1SQI_A.loop.212_224.pdb 06-Oct-2008 12:58 155k
1SQI_B.loop.210_224.pdb 06-Oct-2008 12:58 155k
1SR5_A.loop.354_360.pdb 06-Oct-2008 12:58 178k
1SR6_A.loop.200_213.pdb 06-Oct-2008 12:58 351k
1SR6_A.loop.730_734.pdb 06-Oct-2008 12:58 347k
1SUL_A.loop.50_60.pdb 06-Oct-2008 12:58 84k
1T67_A.loop.84_92.pdb 06-Oct-2008 12:58 153k
1T6B_X.loop.275_288.pdb 06-Oct-2008 12:58 294k
1TFZ_A.loop.172_180.pdb 06-Oct-2008 12:58 155k
1TFZ_A.loop.230_242.pdb 06-Oct-2008 12:58 156k
1TG5_A.loop.380_390.pdb 06-Oct-2008 12:58 158k
1TKH_A.loop.198_202.pdb 06-Oct-2008 12:58 111k
1TQD_A.loop.189_202.pdb 06-Oct-2008 12:58 174k
1TZK_B.loop.129_139.pdb 06-Oct-2008 12:58 139k
1TZM_D.loop.129_139.pdb 06-Oct-2008 12:58 139k
1U5I_A.loop.563_568.pdb 06-Oct-2008 12:58 273k
1U8R_A.loop.141_151.pdb 06-Oct-2008 12:58 96k
1U8R_B.loop.141_151.pdb 06-Oct-2008 12:58 96k
1U8R_C.loop.141_151.pdb 06-Oct-2008 12:58 96k
1U8R_D.loop.141_151.pdb 06-Oct-2008 12:58 96k
1U8R_G.loop.141_151.pdb 06-Oct-2008 12:58 96k
1U8R_I.loop.141_151.pdb 06-Oct-2008 12:58 96k
1U9R_A.loop.44_51.pdb 06-Oct-2008 12:58 58k
1UKH_A.loop.336_349.pdb 06-Oct-2008 12:58 145k
1V04_A.loop.71_80.pdb 06-Oct-2008 12:58 145k
1VDV_B.loop.528_537.pdb 06-Oct-2008 12:58 544k
1VFW_A.loop.254_268.pdb 06-Oct-2008 12:58 145k
1VFX_A.loop.288_303.pdb 06-Oct-2008 12:58 144k
1VFZ_A.loop.292_303.pdb 06-Oct-2008 12:58 147k
1VIW_B.loop.90_96.pdb 06-Oct-2008 12:58 86k
1VJS_A.loop.181_193.pdb 06-Oct-2008 12:58 210k
1W4C_B.loop.195_207.pdb 06-Oct-2008 12:58 126k
1W4C_F.loop.195_207.pdb 06-Oct-2008 12:58 126k
1W4C_G.loop.195_207.pdb 06-Oct-2008 12:58 126k
1W4C_M.loop.195_207.pdb 06-Oct-2008 12:58 126k
1W4C_N.loop.195_207.pdb 06-Oct-2008 12:58 126k
1W4C_O.loop.195_207.pdb 06-Oct-2008 12:58 126k
1W4C_T.loop.195_207.pdb 06-Oct-2008 12:58 126k
1W4C_V.loop.195_207.pdb 06-Oct-2008 12:58 126k
1W4C_W.loop.195_207.pdb 06-Oct-2008 12:58 126k
1XPO_A.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPO_B.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPO_C.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPO_D.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPO_E.loop.147_152.pdb 06-Oct-2008 12:58 174k
1XPO_F.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPR_A.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPR_B.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPR_C.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPR_D.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPR_E.loop.147_152.pdb 06-Oct-2008 12:58 174k
1XPR_F.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPU_A.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPU_B.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPU_C.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPU_D.loop.147_152.pdb 06-Oct-2008 12:58 175k
1XPU_E.loop.147_152.pdb 06-Oct-2008 12:58 174k
1XPU_F.loop.147_152.pdb 06-Oct-2008 12:58 175k
1Y0R_A.loop.119_133.pdb 06-Oct-2008 12:58 145k
1Y0Y_A.loop.119_133.pdb 06-Oct-2008 12:58 146k
1Y14_B.loop.57_70.pdb 06-Oct-2008 12:58 71k
1YG2_A.loop.58_68.pdb 06-Oct-2008 12:58 77k
1ZYJ_A.loop.171_185.pdb 06-Oct-2008 12:58 150k
1ZZ2_A.loop.172_184.pdb 06-Oct-2008 12:58 151k
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256HitTableShortSort..> 07-Oct-2008 15:19 26k
2A9Q_A.loop.53_59.pdb 06-Oct-2008 12:58 50k
2ACE_A.loop.484_490.pdb 06-Oct-2008 12:58 228k
2AI0_H.loop.100_109.pdb 06-Oct-2008 12:58 92k
2ANT_I.loop.29_43.pdb 06-Oct-2008 12:58 186k
2ANT_L.loop.395_405.pdb 06-Oct-2008 12:58 175k
2BDY_A.loop.31_39.pdb 06-Oct-2008 12:58 122k
2BEH_L.loop.398_403.pdb 06-Oct-2008 12:58 175k
2BOD_X.loop.80_87.pdb 06-Oct-2008 12:58 115k
2CNB_A.loop.237_249.pdb 06-Oct-2008 12:58 157k
2CNB_B.loop.235_249.pdb 06-Oct-2008 12:58 157k
2CNB_D.loop.235_249.pdb 06-Oct-2008 12:58 157k
2CVC_A.loop.500_507.pdb 06-Oct-2008 12:58 206k
2D1Y_A.loop.192_201.pdb 06-Oct-2008 12:58 99k
2DNJ_A.loop.99_107.pdb 06-Oct-2008 12:58 110k
2E1R_A.loop.50_65.pdb 06-Oct-2008 12:58 353k
2EFX_D.loop.207_220.pdb 06-Oct-2008 12:58 151k
2FBK_A.loop.120_128.pdb 06-Oct-2008 12:58 68k
2FBK_B.loop.120_128.pdb 06-Oct-2008 12:58 68k
2FF3_B.loop.38_51.pdb 06-Oct-2008 12:58 156k
2G28_A.loop.400_414.pdb 06-Oct-2008 12:58 346k
2GUF_A.loop.229_241.pdb 06-Oct-2008 12:58 240k
2GUF_A.loop.573_582.pdb 06-Oct-2008 12:58 240k
2GVQ_C.loop.79_84.pdb 06-Oct-2008 12:58 142k
2GYS_A.loop.342_351.pdb 06-Oct-2008 12:58 176k
2I3S_C.loop.225_233.pdb 06-Oct-2008 12:58 143k
2I3S_E.loop.224_233.pdb 06-Oct-2008 12:58 145k
2I3T_C.loop.225_232.pdb 06-Oct-2008 12:58 145k
2I3T_E.loop.225_232.pdb 06-Oct-2008 12:58 145k
2I3T_G.loop.225_232.pdb 06-Oct-2008 12:58 145k
2IEA_A.loop.400_414.pdb 06-Oct-2008 12:58 346k
2IK4_A.loop.103_113.pdb 06-Oct-2008 12:58 121k
2IYN_C.loop.84_97.pdb 06-Oct-2008 12:58 52k
2JAV_A.loop.131_141.pdb 06-Oct-2008 12:58 116k
2MAN_A.loop.229_234.pdb 06-Oct-2008 12:58 126k
2P9I_A.loop.39_53.pdb 06-Oct-2008 12:58 175k
2P9N_A.loop.39_52.pdb 06-Oct-2008 12:58 176k
2REN_A.loop.165_171.pdb 06-Oct-2008 12:58 134k
2SHP_A.loop.235_246.pdb 06-Oct-2008 12:58 218k
2SHP_B.loop.235_246.pdb 06-Oct-2008 12:58 218k
3MAN_A.loop.228_234.pdb 06-Oct-2008 12:58 126k
Supplementary material for "Predict novel calcium-binding sites using FEATURE combined with modeling methods" by Tianyun Liu and Russ B Altman.
1. 256HitTableShortSorted_by_loopScores
We make 256 predictions of calcium binding by FEATURE combined with modeling methods.
Protein name is PDB code followed by the chain identifier.
We have built structures for gaps of which 3D structures are not available in the original PDB files.
Information of these structures is given in column 2-4.
Column 5 and 6 list FEATURE scores at the predicted sites in the structures where loop structures are
missing (Gap) and the structures of which loop structures were rebuilt by modeling methods (Loop).
Ligands observed experimentally in these proteins are listed in column 7 and the ligand IDs are from PDB.
2. All PDB file names are composisted of PDB-code, Chain-ID, loop-start-residue-number and loop-end-residue-number.
Each file contains structure of the loop built by modeling methods and the best FEATURE predicted site is written in PDB format.