@text
Kinemage Supplement to Branden & Tooze "Introduction to Protein Structure"
Chapter 5 -  ANTIPARALLEL BETA STRUCTURES

		Contents of file C5BETA.KIN:
Kin.1- CuZn superoxide dismutase, as an antiparallel beta barrel (Fig. 5.1)
Kin.2- Retinol-binding protein, an up&down beta barrel (Fig. 5.2, 5.3)
Kin.3- Gamma crystallin - repeats of domains and of Greek key motifs (Fig. 5.11-5.15)
Kin.4- Flu hemagglutinin jellyroll Greek key beta barrel (Fig. 15.23)

	Kinemage 1 shows Cu,Zn superoxide dismutase (SOD), an 8-stranded antiparallel beta barrel structure.  View1 matches Fig. 5.1a, with strands pointing up colored skyblue and strands pointing down colored pink, to emphasize that they alternate in direction going around the barrel.  View2 looks down the axis of the barrel, as in Fig. 5.1b; turn off "loops" to see the beta structure more clearly.  View3 looks from the side of the barrel, as in 5.1c.  Beta sheets always twist in a righthanded direction, which makes the strands wind around the barrel axis, so that the back strands are at about a 30° angle to the front strands.  Some of the connections arch across the barrel, skipping intervening strands, which means that this protein has what is called a Greek key topology (see Kin. 4).

	Kinemage 2 shows retinol-binding protein (RBP), an 8-stranded antiparallel beta barrel with a simple up&down topology where each strand connects to its nearest neighbor.  Upward-pointing strands are in skyblue, downward-pointing strands are in pink, loops are white, and the retinol bound in the hydrophobic interior of the barrel is yellow.  Click "ANIMATE" to see the up&down topology of the RBP beta barrel built up one strand at a time from the N- to the C-terminus.

	Kinemage 3 shows the Calpha backbone of gamma crystallin, an antiparallel beta protein that is organized into two, well-separated domains related by an approximate 2-fold axis, and into four similar 4-stranded Greek key beta motifs.  Each motif has a 4-stranded Greek key topology, where 3 strands are from one sheet and one from the other.  The colors emphasize the symmetry of the repeats in the structure and sequence:  each motif is a different color, and the combination of a pink and a green motif is repeated in each domain.  This protein almost certainly evolved by two gene duplication events.  View2 looks down the domain 2-fold axis, View3 down the internal 2-fold within domain 1, and View4 turns the whole structure vertical, for viewing in stereo.

	Kinemage 4 shows the jellyroll Greek key beta barrel from chain HA1 of influenza virus hemagglutinin - beta strands are colored corresponding to the way they pair up in the structure:  yellow nearest the central hairpin, then skyblue, then pink, then green.  View1 matches Fig. 5.23, while View2 is from one edge of the beta barrel.  Animate to see the structure built up in pairs, two strands at a time, out from the central hairpin.
@kinemage 1
@caption (B&T Fig. 5.1)
Cu,Zn superoxide dismutase (SOD) antiparallel beta barrel, with up strands in skyblue, down strands in pink, and loops in white.  View2 looks down the barrel axis and View3 from the side (turn off "loops").  (from PDB file 2SOD)
@onewidth 
@zoom 0.94
@zslab 130
@center -18.255 5.964 -14.243
@matrix
.47223 -.072821 -.878462 -.763175 -.532468 -.366117 -.441092 .843312 -.307023
@2zoom 1.19
@2zslab 140
@2center -16.223 10.671 -12.531
@2matrix
.697044 .71253 -.08019 -.623961 .547664 -.557438 -.353275 .438594 .826337
@3zoom 1.19
@3zslab 80
@3center -15.810 12.833 -10.912
@3matrix
-.898131 -.064021 .435044 .389957 -.573161 .720706 .203211 .816937 .53974
@group {CuZn SOD} 
@subgroup dominant {loops} 
@vectorlist {loops} color= white 
{ca ala o 1}P -19.117 24.539 -21.395
{ca thr o 2}-15.779 24.977 -19.623
{ca asp o 11}P -28.601 6.052 -0.1
{ca gly o 12}-25.251 4.818 1.274
{ca pro o 13}-22.494 6.69 3.121
{ca gly o 24}P -8.189 22.543 -24.361
{ca asp o 25}-9.037 19.239 -26.166
{ca gly o 35}P -17.324 7.089 2.601
{ca leu o 36}-16.056 4.027 0.752
{ca thr o 37}-14.496 0.552 1.043
{ca glu o 38}-10.683 0.756 0.671
{ca his o 46}P -23.465 7.118 -17.491
{ca gln o 47}-25.486 8.238 -20.466
{ca phe o 48}-28.333 10.16 -18.655
{ca gly o 49}-28.743 12.892 -16.024
{ca asp o 50}-31.967 11.239 -14.793
{ca asn o 51}-32.491 10.959 -11.066
{ca thr o 52}-36.021 9.77 -11.199
{ca gln o 53}-35.022 6.218 -10.234
{ca gly o 54}-31.909 7.287 -8.275
{ca cys o 55}-28.622 6.185 -9.763
{ca thr o 56}-30.498 3.603 -11.831
{ca ser o 57}-32.171 6.01 -14.277
{ca ala o 58}-28.69 7.019 -15.499
{ca gly o 59}-28.412 3.858 -17.556
{ca pro o 60}-25.333 2.637 -19.352
{ca his o 61}-21.996 4.304 -19.977
{ca phe o 62}-21.929 7.079 -22.567
{ca asn o 63}-20.795 5.491 -25.831
{ca pro o 64}-21.788 7.664 -28.736
{ca leu o 65}-19.254 5.625 -30.792
{ca ser o 66}-21.174 2.36 -30.456
{ca lys o 67}-18.119 0.581 -28.793
{ca lys o 68}-17.06 -1.663 -25.986
{ca his o 69}-15.819 -1.205 -22.532
{ca gly o 70}-12.283 -0.497 -21.467
{ca gly o 71}-9.955 1.764 -19.48
{ca pro o 72}-9.186 5.479 -19.973
{ca lys o 73}-6.356 4.241 -21.99
{ca asp o 74}-7.637 1.669 -24.448
{ca glu o 75}-8.621 2.792 -27.952
{ca glu o 76}-11.42 0.357 -27.359
{ca arg o 77}-13.142 2.302 -24.724
{ca his o 78}-16.48 3.877 -23.944
{ca val o 79}-16.367 7.753 -23.882
{ca gly o 80}-17.852 7.309 -20.418
{ca lys o 89}P -8.273 5.896 4.907
{ca asn o 90}-11.166 7.039 6.132
{ca pro o 100}P -8.39 13.16 -24.297
{ca leu o 101}-11.691 11.311 -24.846
{ca ile o 102}-14.592 12.913 -22.896
{ca ser o 103}-15.608 16.578 -23.216
{ca leu o 104}-18.365 19.186 -22.817
{ca ser o 105}-18.365 20.466 -26.32
{ca gly o 106}-21.356 18.623 -27.435
{ca glu o 107}-21.462 15.334 -29.183
{ca tyr o 108}-19.219 13.867 -26.496
{ca ser o 109}-20.013 16.634 -23.997
{ca ile o 110}-20.626 14.967 -20.605
{ca ile o 111}-22.886 17.505 -19.018
{ca gly o 112}-26.416 16.86 -18.149
{ca asp o 122}P -13.704 -2.278 -13.243
{ca asp o 123}-11.921 -5.045 -15.225
{ca leu o 124}-11.071 -2.032 -17.321
{ca gly o 125}-9.753 -2.539 -20.871
{ca arg o 126}-9.004 -6.256 -20.92
{ca gly o 127}-10.377 -9.146 -18.916
{ca gly o 128}-13.796 -10.709 -18.185
{ca asn o 129}-16.527 -12.36 -20.24
{ca glu o 130}-19.848 -10.668 -21.355
{ca glu o 131}-20.69 -8.005 -18.681
{ca ser o 132}-16.976 -7.247 -18.681
{ca thr o 133}-16.9 -6.242 -22.301
{ca lys o 134}-19.383 -3.476 -21.907
{ca thr o 135}-19.912 -2.882 -18.291
{ca gly o 136}-16.767 -3.255 -16.071
{ca asn o 137}-17.911 -5.828 -13.595
{ca ala o 150}P -19.89 25.934 -12.862
{ca lys o 151}-17.664 28.879 -13.503
@subgroup dominant {beta} 
@vectorlist {up} color= sky 
{ca thr o 2}P -15.779 24.977 -19.623
{ca lys o 3}-15.58 24.28 -15.929
{ca ala o 4}-18.372 21.99 -14.62
{ca val o 5}-19.143 20.212 -11.353
{ca cys o 6}-20.808 17.168 -9.999
{ca val o 7}-21.808 16.226 -6.431
{ca leu o 8}-21.983 12.544 -5.711
{ca lys o 9}-24.726 11.427 -3.279
{ca gly o 10}-26.513 8.075 -2.603
{ca asp o 11}-28.601 6.052 -0.1
{ca asp o 25}P -9.037 19.239 -26.166
{ca thr o 26}-8.574 17.522 -22.718
{ca val o 27}-10.726 17.631 -19.575
{ca val o 28}-9.111 17.742 -16.189
{ca val o 29}-11.262 15.887 -13.639
{ca thr o 30}-10.454 16.456 -9.965
{ca gly o 31}-12.141 15.972 -6.622
{ca ser o 32}-12.641 13.95 -3.484
{ca ile o 33}-14.8 10.949 -2.756
{ca thr o 34}-15.475 9.72 0.737
{ca gly o 35}-17.324 7.089 2.601
{ca gly o 80}P -17.852 7.309 -20.418
{ca asp o 81}-14.894 5.486 -18.973
{ca leu o 82}-12.406 6.902 -16.726
{ca gly o 83}-11.545 3.661 -14.974
{ca asn o 84}-11.021 3.294 -11.243
{ca val o 85}-10.589 5.73 -8.307
{ca thr o 86}-8.486 4.369 -5.384
{ca ala o 87}-9.66 4.697 -1.764
{ca asp o 88}-7.637 4.63 1.452
{ca lys o 89}-8.273 5.896 4.907
{ca gly o 112}P -26.416 16.86 -18.149
{ca arg o 113}-24.794 13.442 -17.751
{ca thr o 114}-24.313 11.347 -14.633
{ca met o 115}-21.093 10.65 -12.84
{ca val o 116}-21.174 7.232 -11.064
{ca val o 117}-18.903 5.529 -8.619
{ca his o 118}-19.535 1.82 -8.346
{ca glu o 119}-19.242 -0.602 -5.553
{ca lys o 120}-16.549 -2.812 -7.144
{ca pro o 121}-13.569 -2.396 -9.448
{ca asp o 122}-13.704 -2.278 -13.243
@vectorlist {down} color= pink 
{ca pro o 13}P -22.494 6.69 3.121
{ca val o 14}-20.654 7.623 -0.131
{ca gln o 15}-20.343 11.245 -1.079
{ca gly o 16}-17.906 13.313 -3.116
{ca thr o 17}-17.547 16.409 -5.23
{ca ile o 18}-15.825 16.172 -8.663
{ca his o 19}-14.779 19.145 -10.849
{ca phe o 20}-14.205 19.14 -14.547
{ca glu o 21}-12.305 21.836 -16.446
{ca ala o 22}-11.614 21.98 -20.075
{ca lys o 23}-7.872 22.649 -20.629
{ca gly o 24}-8.189 22.543 -24.361
{ca glu o 38}P -10.683 0.756 0.671
{ca gly o 39}-9.211 0.012 -2.813
{ca asp o 40}-10.099 0.905 -6.45
{ca his o 41}-13.645 1.379 -7.71
{ca gly o 42}-15.367 1.852 -11.003
{ca phe o 43}-15.658 5.52 -12.087
{ca his o 44}-17.81 6.344 -15.084
{ca val o 45}-20.094 8.689 -16.978
{ca his o 46}-23.465 7.118 -17.491
{ca gln o 47}-25.486 8.238 -20.466
{ca asn o 90}P -11.166 7.039 6.132
{ca gly o 91}-12.202 5.467 2.793
{ca val o 92}-11.175 8.312 0.735
{ca ala o 93}-9.504 9.428 -2.33
{ca ile o 94}-7.977 10.537 -5.282
{ca val o 95}-9.633 12.133 -8.153
{ca asp o 96}-7.154 13.594 -10.619
{ca ile o 97}-7.464 12.504 -14.207
{ca val o 98}-6.844 14.111 -17.599
{ca asp o 99}-8.866 12.802 -20.551
{ca pro o 100}-8.39 13.16 -24.297
{ca asn o 137}P -17.911 -5.828 -13.595
{ca ala o 138}-17.818 -2.735 -11.255
{ca gly o 139}-21.45 -3.243 -10.278
{ca ser o 140}-23.556 -1.541 -7.641
{ca arg o 141}-23.411 2.253 -7.983
{ca leu o 142}-23.49 3.814 -4.559
{ca ala o 143}-23.269 7.554 -5.532
{ca cys o 144}-24.078 9.493 -8.584
{ca gly o 145}-24.669 12.971 -9.74
{ca val o 146}-25.758 14.936 -12.749
{ca ile o 147}-22.787 17.014 -14.105
{ca gly o 148}-23.619 20.681 -14.247
{ca ile o 149}-21.97 23.901 -15.27
{ca ala o 150}-19.89 25.934 -12.862
@subgroup dominant {Cu,Zn} 
@vectorlist {CuZn} color= yellow 
{Cu cu o 1}P -20.628 2.496 -14.6
{Cu cu o 1}-20.628 2.496 -14.6
{Cu cu o 1}P U -21.628 2.496 -14.6
{Cu cu o 1}U -19.628 2.496 -14.6
{Cu cu o 1}P U -20.628 1.496 -14.6
{Cu cu o 1}U -20.628 3.496 -14.6
{Cu cu o 1}P U -20.628 2.496 -15.6
{Cu cu o 1}U -20.628 2.496 -13.6
{Zn zn o 2}P -17.865 1.322 -20.093
{Zn zn o 2}-17.865 1.322 -20.093
{Zn zn o 2}P U -18.865 1.322 -20.093
{Zn zn o 2}U -16.865 1.322 -20.093
{Zn zn o 2}P U -17.865 0.322 -20.093
{Zn zn o 2}U -17.865 2.322 -20.093
{Zn zn o 2}P U -17.865 1.322 -21.093
{Zn zn o 2}U -17.865 1.322 -19.093
@kinemage 2
@caption 
Retinol-binding protein (RBP), an antiparallel beta barrel of 8 strands with a simple up&down topology.  Up strands are skyblue, down strands are pink, and the retinol bound inside the barrel is yellow.  Animate to see RBP built up from N to C terminus.  (from PDB file 1RBP)
@onewidth 
@zoom 1.00 
@zslab 180 
@center 26.412 24.844 48.714 
@matrix 
-0.510511 -0.511480 0.691206 -0.853685 0.205235 -0.478645 0.102958 -0.834426 -0.541418 
@2zoom 1.00 
@2zslab 170 
@2center 26.412 24.844 48.714 
@2matrix 
-0.603300 -0.635956 -0.481237 -0.754988 0.649846 0.087711 0.256950 0.416244 -0.872191 
@group {RBP} animate
@subgroup dominant {Calphas}
@vectorlist {lp 0} color= white master= {loops}
{ca glu 1}P 3.949 34.44 55.713
{ca arg 2}5.366 31.499 53.628
{ca asp 3}6.708 27.997 53.746
{ca cys 4}9.943 26.828 55.235
{ca arg 5}9.129 23.166 54.62
{ca val 6}11.622 21.634 52.231
{ca ser 7}8.908 19.832 50.343
{ca ser 8}7.46 23.188 49.393
{ca phe 9}10.622 24.935 48.084
{ca arg 10}10.362 25.756 44.411
{ca val 11}13.301 24.819 42.131
{ca lys 12}14.529 25.705 38.602
{ca glu 13}11.914 24.982 36.051
{ca asn 14}13.131 22.798 33.214
{ca phe 15}16.785 22.831 34.36
{ca asp 16}19.118 22.44 31.361
{ca lys 17}22.116 20.335 32.428
{ca ala 18}24.225 21.435 29.536
{ca arg 19}23.572 25.213 29.976
{ca phe 20}24.824 24.993 33.535
{ca ser 21}28.164 23.462 32.364
@vectorlist {b 1} color=pink master= {beta}
{ca ser 21}P 28.164 23.462 32.364
{ca gly 22}31.405 25.226 33.108
{ca thr 23}32.953 27.332 35.809
{ca trp 24}30.975 28.637 38.69
{ca tyr 25}32.617 30.758 41.381
{ca ala 26}31.121 30.543 44.82
{ca met 27}30.348 34.076 46.083
{ca ala 28}28.331 33.354 49.18
{ca lys 29}27.693 30.372 51.421
{ca lys 30}25.425 29.034 54.117
{ca asp 31}27.451 26.312 56.015
{ca pro 32}25.993 22.924 57.213
{ca glu 33}26.837 21.315 60.548
@vectorlist {lp 1} color= white master= {loops}
{ca glu 33}P 26.837 21.315 60.548
{ca gly 34}30.425 20.203 60.994
{ca leu 35}33.311 20.275 58.611
{ca phe 36}32.883 22.017 55.238
{ca leu 37}34.945 23.936 52.617
{ca gln 38}36.014 27.369 53.818
@vectorlist {b 2} color=sky master= {beta}
{ca gln 38}P 36.014 27.369 53.818
{ca asp 39}36.859 29.576 50.876
{ca asn 40}38.554 29.652 47.495
{ca ile 41}35.621 27.614 46.137
{ca val 42}35.3 27.079 42.405
{ca ala 43}33.195 24.292 40.882
{ca glu 44}33.392 22.98 37.29
{ca phe 45}30.152 21.504 36.066
{ca ser 46}30.182 18.999 33.241
{ca val 47}27.704 16.787 31.292
{ca asp 48}28.812 13.737 29.174
{ca glu 49}27.101 12.405 25.976
@vectorlist {lp 2} color= white master= {loops}
{ca glu 49}P 27.101 12.405 25.976
{ca thr 50}24.439 10.392 27.875
{ca gly 51}23.166 13.325 29.992
@vectorlist {b 3} color=pink master= {beta}
{ca gly 51}P 23.166 13.325 29.992
{ca gln 52}25.161 12.377 33.133
{ca met 53}26.341 15.449 35.026
{ca ser 54}29.479 15.51 37.14
{ca ala 55}31.397 18.326 38.782
{ca thr 56}34.729 18.984 40.385
{ca ala 57}35.022 21.409 43.278
{ca lys 58}38.197 23.017 44.458
{ca gly 59}38.39 24.748 47.872
{ca arg 60}40.353 25.245 51.091
{ca val 61}39.272 23.217 54.172
{ca arg 62}40.732 23.363 57.731
{ca leu 63}41.266 19.793 58.984
{ca leu 64}41.453 19.109 62.842
@vectorlist {lp 3} color= white master= {loops}
{ca leu 64}P 41.453 19.109 62.842
{ca asn 65}45.228 18.871 62.895
@vectorlist {b 4} color=sky master= {beta}
{ca asn 65}P 45.228 18.871 62.895
{ca asn 66}44.962 22.393 61.464
{ca trp 67}45.827 21.479 57.942
{ca asp 68}45.122 23.711 55.113
{ca val 69}44.417 21.447 52.291
{ca cys 70}43.116 22.616 49.016
{ca ala 71}40.558 19.863 48.516
{ca asp 72}39.958 18.476 45.032
{ca met 73}36.479 17.158 45.162
{ca val 74}34.615 15.11 42.607
{ca gly 75}30.827 14.782 42.465
{ca thr 76}28.663 12.623 40.128
{ca phe 77}24.869 13.437 39.9
{ca thr 78}21.92 11.098 39.713
{ca asp 79}18.737 12.433 38.089
@vectorlist {lp 4} color= white master= {loops}
{ca asp 79}P 18.737 12.433 38.089
{ca thr 80}15.391 12.331 39.84
{ca glu 81}11.916 12.908 38.435
{ca asp 82}12.464 16.613 39.116
{ca pro 83}14.995 18.046 36.581
{ca ala 84}16.522 20.544 39.05
@vectorlist {b 5} color=pink master= {beta}
{ca ala 84}P 16.522 20.544 39.05
{ca lys 85}16.912 18.03 42.017
{ca phe 86}19.819 15.57 42.003
{ca lys 87}21.446 13.085 44.364
{ca met 88}25.169 13.794 44.488
{ca lys 89}27.768 11.259 45.41
{ca tyr 90}31.037 12.925 46.287
{ca trp 91}34.561 12.07 47.307
{ca gly 92}37.968 13.736 47.481
@vectorlist {lp 5} color= white master= {loops}
{ca gly 92}P 37.968 13.736 47.481
{ca val 93}40.928 12.752 45.257
{ca ala 94}42.727 12.345 48.61
{ca ser 95}41.525 9.56 50.833
{ca phe 96}41.198 11.767 53.91
{ca leu 97}38.664 14.063 52.208
@vectorlist {b 6} color=sky master= {beta}
{ca leu 97}P 38.664 14.063 52.208
{ca gln 98}35.043 13.66 53.008
{ca lys 99}32.935 11.219 51.001
{ca gly 100}29.086 11.297 51.135
{ca asn 101}25.793 11.459 49.32
{ca asp 102}23.722 14.71 49.451
{ca asp 103}20.756 16.171 47.609
{ca his 104}21.693 18.871 45.118
{ca trp 105}18.926 21.295 44.137
{ca ile 106}19.357 24.086 41.566
{ca val 107}16.961 26.503 43.207
{ca asp 108}17.561 29.126 40.471
{ca thr 109}20.062 30.116 37.835
{ca asp 110}19.974 32.143 34.707
@vectorlist {lp 6} color= white master= {loops}
{ca asp 110}P 19.974 32.143 34.707
{ca tyr 111}22.865 29.978 33.383
{ca asp 112}25.048 33.034 32.538
{ca thr 113}25.392 35.063 35.723
{ca tyr 114}24.144 33.336 38.818
@vectorlist {b 7} color=pink master= {beta}
{ca tyr 114}P 24.144 33.336 38.818
{ca ala 115}23.187 30.052 40.447
{ca val 116}21.589 29.184 43.816
{ca gln 117}22.127 25.675 45.08
{ca tyr 118}20.644 24.12 48.285
{ca ser 119}20.985 20.863 50.117
{ca cys 120}19.045 19.808 53.2
{ca arg 121}21.102 17.118 54.968
{ca leu 122}18.453 16.553 57.616
@vectorlist {lp 7} color= white master= {loops}
{ca leu 122}P 18.453 16.553 57.616
{ca leu 123}14.844 17.305 58.064
{ca asn 124}13.097 18.195 61.202
{ca leu 125}9.89 16.345 62.026
{ca asp 126}7.916 19.428 60.898
{ca gly 127}9.29 19.174 57.38
{ca thr 128}11.743 22.053 57.647
{ca cys 129}15.496 21.513 57.385
{ca ala 130}17.539 20.879 60.525
@vectorlist {b 8} color=sky master= {beta}
{ca ala 130}P 17.539 20.879 60.525
{ca asp 131}20.891 20.999 58.78
{ca ser 132}21.361 22.574 55.349
{ca tyr 133}23.985 24.287 53.26
{ca ser 134}23.577 26.647 50.274
{ca phe 135}25.823 28.316 47.712
{ca val 136}25.458 31.371 45.555
{ca phe 137}27.49 30.928 42.385
{ca ser 138}28.66 33.567 39.918
{ca arg 139}29.977 33.184 36.382
@vectorlist {lp 8} color= white master= {loops}
{ca arg 139}P 29.977 33.184 36.382
{ca asp 140}32.276 36.108 36.995
{ca pro 141}35.004 35.874 39.737
{ca asn 142}34.132 39.452 40.693
{ca gly 143}30.555 38.739 41.638
{ca leu 144}27.023 39.529 40.702
{ca pro 145}25.458 42.659 39.225
{ca pro 146}23.04 44.599 41.475
{ca glu 147}20.339 43.027 39.34
{ca ala 148}21.382 39.409 40.061
{ca gln 149}21.895 40.327 43.722
{ca lys 150}18.213 41.356 44.186
{ca ile 151}16.984 38.006 42.744
{ca val 152}19.51 36.016 44.789
{ca arg 153}18.335 37.699 48.134
{ca gln 154}14.705 37.007 47.039
{ca arg 155}15.62 33.305 46.679
{ca gln 156}17.525 33.28 50.016
{ca glu 157}14.466 34.546 51.833
{ca glu 158}12.424 31.857 49.939
{ca leu 159}14.791 29.172 51.245
{ca cys 160}14.347 30.44 54.832
{ca leu 161}18.086 31.15 54.776
{ca ala 162}17.992 34.934 54.589
{ca arg 163}20.722 36.609 56.609
{ca gln 164}22.58 33.294 56.949
{ca tyr 165}25.207 33.651 54.328
{ca arg 166}28.767 34.776 54.613
{ca leu 167}30.954 36.056 51.735
{ca ile 168}33.681 33.685 50.317
{ca val 169}37.33 34.726 50.082
{ca his 170}39.224 34.101 46.979
{ca asn 171}42.919 34.835 47.548
{ca gly 172}44.551 32.28 45.19
{ca tyr 173}45.392 29.908 48.134
{ca cys 174}44.659 26.901 46.003
@subgroup dominant {retinol} 
@vectorlist {retinol} color=yellow
{c1 rtl 1}P 29.611 21.373 45.313
{c2 rtl 1}29.353 21.382 43.799
{c3 rtl 1}30.405 20.84 42.987
{c4 rtl 1}30.678 19.375 43.278
{c5 rtl 1}30.87 19.136 44.759
{c6 rtl 1}30.391 20.023 45.717
{c1 rtl 1}P 29.611 21.373 45.313
{c6 rtl 1}30.391 20.023 45.717
{c7 rtl 1}30.414 19.748 47.187
{c8 rtl 1}31.534 19.557 47.92
{c9 rtl 1}31.615 19.289 49.328
{c10 rtl 1}32.869 19.106 49.829
{c11 rtl 1}33.241 18.889 51.213
{c12 rtl 1}34.527 18.665 51.595
{c13 rtl 1}34.959 18.49 52.975
{c14 rtl 1}36.268 18.238 53.23
{c15 rtl 1}36.758 18.042 54.587
{o21 rtl 1}38.122 17.788 54.897
{c16 rtl 1}P 28.241 21.481 46.026
{c1 rtl 1}29.611 21.373 45.313
{c17 rtl 1}30.456 22.597 45.686
{c5 rtl 1}P 30.87 19.136 44.759
{c18 rtl 1}31.737 17.897 45.005
{c9 rtl 1}P 31.615 19.289 49.328
{c19 rtl 1}30.295 19.156 50.116
{c13 rtl 1}P 34.959 18.49 52.975
{c20 rtl 1}33.889 18.609 54.109
@subgroup dominant {labels}
@labellist {lbl} color=sea
{ C-t} 44.659 26.901 46.003
{ N-t} 3.949 34.44 55.713
@group dominant {0 strand} animate
@vectorlist {lp0} instance= {lp 0}
@group dominant {1 strand} animate
@subgroup {str 1}
@vectorlist {lp0} instance= {lp 0}
@vectorlist {b1} instance= {b 1}
@vectorlist {lp1} instance= {lp 1}
@group dominant {2 strands} animate
@subgroup {str1} instance= {str 1}
@subgroup {str 2}
@vectorlist {b2} instance= {b 2}
@vectorlist {lp2} instance= {lp 2}
@group dominant {3 strands} animate
@subgroup {str1} instance= {str 1}
@subgroup {str2} instance= {str 2}
@subgroup {str 3}
@vectorlist {b3} instance= {b 3}
@vectorlist {lp3} instance= {lp 3}
@group dominant {4 strands} animate
@subgroup {str1} instance= {str 1}
@subgroup {str2} instance= {str 2}
@subgroup {str3} instance= {str 3}
@subgroup {str 4}
@vectorlist {b4} instance= {b 4}
@vectorlist {lp4} instance= {lp 4}
@group dominant {5 strands} animate
@subgroup {str1} instance= {str 1}
@subgroup {str2} instance= {str 2}
@subgroup {str3} instance= {str 3}
@subgroup {str4} instance= {str 4}
@subgroup {str 5}
@vectorlist {b5} instance= {b 5}
@vectorlist {lp5} instance= {lp 5}
@group dominant {6 strands} animate
@subgroup {str1} instance= {str 1}
@subgroup {str2} instance= {str 2}
@subgroup {str3} instance= {str 3}
@subgroup {str4} instance= {str 4}
@subgroup {str5} instance= {str 5}
@subgroup {str 6}
@vectorlist {b6} instance= {b 6}
@vectorlist {lp6} instance= {lp 6}
@group dominant {7 strands} animate
@subgroup {str1} instance= {str 1}
@subgroup {str2} instance= {str 2}
@subgroup {str3} instance= {str 3}
@subgroup {str4} instance= {str 4}
@subgroup {str5} instance= {str 5}
@subgroup {str6} instance= {str 6}
@subgroup {str 7}
@vectorlist {b7} instance= {b 7}
@vectorlist {lp7} instance= {lp 7}
@group dominant {8 strands} animate
@subgroup {ca} instance= {Calphas}
@subgroup {lbl} instance= {labels}
@kinemage 3
@caption (B&T Fig. 5.11-5.15)
Gamma crystallin - organization into domains, and into 4-stranded Greek key beta motifs.  View2 looks down the domain 2-fold, View3 down the internal 2-fold within domain 1, and View4 turns the whole structure vertical, for viewing in stereo.  {from PDB file 1GCR)
@zoom 1.00 
@zslab 230 
@center 8.494 16.846 25.098 
@matrix 
-0.400069 0.537870 -0.742052 -0.034555 0.800243 0.598679 0.915833 0.265155 -0.301566 
@2zoom 1.00 
@2zslab 230 
@2center 10.721 15.050 26.003 
@2matrix 
0.808024 0.499825 0.311885 -0.390843 0.058656 0.918587 0.440839 -0.864138 0.242749 
@3zoom 1.45 
@3zslab 230 
@3center 3.936 14.566 35.947 
@3matrix 
0.986546 0.023941 0.161725 -0.151678 0.503179 0.850768 -0.061008 -0.863851 0.500040 
@4zoom 1.00 
@4zslab 230 
@4center 8.494 16.846 25.098 
@4matrix 
0.556896 0.373131 -0.742052 0.800974 -0.004845 0.598679 0.219790 -0.927766 -0.301566 
@group {crystallin} 
@subgroup {domain 1} 
@vectorlist {motif 1} color= pink 
{ca gly 1}P -0.85 7.186 32.444
{ca lys 2}-0.545 8.403 36.001
{ca ile 3}1.619 11.283 37.498
{ca thr 4}1.647 12.667 41.07
{ca phe 5}2.893 16.251 41.751
{ca tyr 6}4.055 17.166 45.261
{ca glu 7}4.516 20.693 46.656
{ca asp 8}7.576 19.886 48.811
{ca arg 9}10.667 17.685 48.066
{ca gly 10}10.816 14.017 49.249
{ca phe 11}7.163 13.412 48.325
{ca gln 12}5.901 15.652 51.052
{ca gly 13}3.062 18.142 51.345
{ca his 14}-0.072 18.722 49.182
{ca cys 15}-0.241 16.616 46.003
{ca tyr 16}-2.258 16.237 42.82
{ca glu 17}-2.561 13.23 40.551
{ca cys 18}-3.17 13.691 36.791
{ca ser 19}-3.993 10.993 34.183
{ca ser 20}-4.251 13.073 31.043
{ca asp 21}-3.338 16.402 29.401
{ca cys 22}-3.723 19.332 31.739
{ca pro 23}-3.506 22.852 30.272
{ca asn 24}-3.449 24.517 33.68
{ca leu 25}-2.44 22.956 36.934
{ca gln 26}-2.288 26.177 38.834
{ca pro 27}-5.634 25.613 40.671
{ca tyr 28}-4.506 22.223 41.952
{ca phe 29}-1.02 22.946 43.462
{ca ser 30}1.116 25.932 44.348
{ca arg 31}4.69 24.751 43.557
{ca cys 32}6.244 21.382 42.532
{ca asn 33}9.272 19.977 44.336
{ca ser 34}8.966 16.274 43.781
{ca ile 35}7.018 13.943 41.416
{ca arg 36}6.086 10.237 41.157
{ca val 37}5.415 8.871 37.629
{ca asp 38}3.458 5.711 37.975
{ca ser 39}2.829 5.216 34.328
{ca gly 40}3.208 6.922 31.032
@vectorlist {motif 2} color= sea 
{ca gly 40}P 3.208 6.922 31.032
{ca cys 41}5.584 9.279 29.298
{ca trp 42}4.979 12.881 30.143
{ca met 43}6.035 16.345 29.044
{ca leu 44}5.873 18.919 31.842
{ca tyr 45}5.858 22.705 31.153
{ca glu 46}6.792 25.676 33.37
{ca arg 47}3.918 27.824 32.2
{ca pro 48}0.248 26.937 31.464
{ca asn 49}-0.885 26.182 27.965
{ca tyr 50}2.146 24.025 27.252
{ca gln 51}4.595 26.899 27.411
{ca gly 52}8.027 27.794 28.852
{ca his 53}10.745 25.309 29.747
{ca gln 54}9.814 21.717 28.893
{ca tyr 55}10.745 18.506 30.802
{ca phe 56}10.431 14.895 29.659
{ca leu 57}9.683 12.438 32.416
{ca arg 58}9.259 8.588 32.406
{ca arg 59}8.042 6.355 35.199
{ca gly 60}10.058 6.681 38.393
{ca asp 61}10.501 8.697 41.582
{ca tyr 62}11.79 12.238 41.432
{ca pro 63}12.455 13.403 44.998
{ca asp 64}13.625 16.861 43.937
{ca tyr 65}13.183 19.04 40.911
{ca gln 66}16.83 18.907 39.861
{ca gln 67}16.167 15.278 39.121
{ca trp 68}14.082 16.209 36.018
{ca met 69}16.524 18.968 35.118
{ca gly 70}13.953 21.6 36.286
{ca phe 71}14.746 25.326 36.072
{ca asn 72}12.699 25.982 39.214
{ca asp 73}9.711 24.698 41.206
{ca ser 74}7.019 25.727 38.666
{ca ile 75}5.002 23.097 36.722
{ca arg 76}1.784 24.595 35.328
{ca ser 77}0.677 22.234 32.535
{ca cys 78}1.429 18.672 31.35
{ca arg 79}0.883 16.471 28.281
{ca leu 80}0.557 12.657 28.43
{ca ile 81}2.487 11.655 25.294
{ca pro 82}0.587 8.926 23.49
{ca gln 83}2.258 5.636 22.8
{ca his 84}3.686 4.73 19.387
{ca thr 85}4.544 1.268 18.246
@subgroup {domain 2} 
@vectorlist {motif 3} color= pinktint 
{ca thr 85}P 4.544 1.268 18.246
{ca gly 86}6.055 0.542 14.872
{ca thr 87}8.571 2.879 13.313
{ca phe 88}9.409 6.419 14.519
{ca arg 89}10.34 8.584 11.449
{ca met 90}11.493 12.222 11.249
{ca arg 91}13.063 14.225 8.378
{ca ile 92}15.491 17.097 9.179
{ca tyr 93}16.532 19.882 6.74
{ca glu 94}19.576 22.129 6.434
{ca arg 95}17.488 25.268 5.803
{ca asp 96}14.038 26.603 6.922
{ca asp 97}10.862 25.73 4.95
{ca phe 98}12.094 22.253 4.182
{ca arg 99}14.996 23.427 1.942
{ca gly 100}18.556 22.099 1.736
{ca gln 101}19.782 18.55 2.236
{ca met 102}17.257 16.299 3.963
{ca ser 103}18.116 13.34 6.187
{ca glu 104}15.613 10.891 7.608
{ca ile 105}16.052 9.682 11.184
{ca thr 106}14.479 6.479 12.411
{ca asp 107}16.367 6.067 15.648
{ca asp 108}17.637 7.943 18.717
{ca cys 109}20.587 10.141 17.748
{ca pro 110}22.791 11.216 20.688
{ca ser 111}24.872 13.628 18.582
{ca leu 112}23.716 15.103 15.297
{ca gln 113}27.23 16.669 14.869
{ca asp 114}28.789 13.159 14.882
{ca arg 115}26.32 11.557 12.517
{ca phe 116}25.59 14.568 10.303
{ca his 117}28.237 17.162 11.103
{ca leu 118}25.131 19.321 11.826
{ca ser 119}24.962 21.597 14.874
{ca glu 120}21.872 23.416 13.469
{ca val 121}18.572 22.123 12.131
{ca his 122}16.413 24.787 10.523
{ca ser 123}13.296 22.806 9.683
{ca leu 124}12.046 19.249 10.38
{ca asn 125}8.993 17.147 9.606
{ca val 126}7.879 14.497 12.149
{ca leu 127}6.079 11.752 10.224
{ca glu 128}5.545 9.051 12.824
{ca gly 129}5.878 8.968 16.586
{ca gly 129}P 5.878 8.968 16.586
{ca ser 130}6.731 11.749 19.059
{ca trp 131}10.322 12.778 19.801
@vectorlist {motif 4} color= greentint 
{ca gly 129}P 5.878 8.968 16.586
{ca ser 130}6.731 11.749 19.059
{ca trp 131}10.322 12.778 19.801
{ca val 132}12.248 14.984 22.155
{ca leu 133}14.713 17.511 20.662
{ca tyr 134}17.639 18.524 22.946
{ca glu 135}19.806 21.663 22.693
{ca met 136}23.006 19.561 23.248
{ca pro 137}24.398 16.161 22.398
{ca ser 138}23.799 13.24 24.673
{ca tyr 139}20.331 14.498 25.716
{ca arg 140}21.36 17.67 27.563
{ca gly 141}20.257 21.243 27.373
{ca arg 142}16.753 22.603 26.736
{ca gln 143}14.087 20.016 25.71
{ca tyr 144}11.347 20.398 23.188
{ca leu 145}8.538 17.925 22.528
{ca leu 146}8.004 17.201 18.799
{ca arg 147}4.674 15.52 17.849
{ca pro 148}3.821 14.426 14.276
{ca gly 149}3.511 17.455 12.109
{ca glu 150}5.44 20.045 10.09
{ca tyr 151}8.06 22.315 11.705
{ca arg 152}9.016 24.829 9.099
{ca arg 153}11.113 27.029 11.397
{ca tyr 154}12.755 26.424 14.771
{ca leu 155}10.2 28.8 16.33
{ca asp 156}7.598 26.119 15.585
{ca trp 157}9.03 23.759 18.203
{ca gly 158}9.215 26.535 20.739
{ca ala 159}13.001 27.161 20.765
{ca met 160}14.947 30.374 20.646
{ca asn 161}17.709 29.23 18.252
{ca ala 162}18.23 26.411 15.717
{ca lys 163}20.847 24.567 17.753
{ca val 164}20.099 20.928 18.09
{ca gly 165}22.424 18.386 19.556
{ca ser 166}20.424 15.123 19.946
{ca leu 167}17.052 13.516 19.245
{ca arg 168}15.24 10.836 21.323
{ca arg 169}12.153 8.818 20.374
{ca val 170}9.49 8.916 23.033
{ca met 171}9.37 5.283 24.114
{ca asp 172}8.664 3.537 27.416
{ca phe 173}11.752 1.5 28.434
{ca tyr 174}8.922 -0.884 28.649
@kinemage 4
@caption (B&T Fig. 15.23)
The jellyroll Greek key beta barrel of flu hemagglutinin - beta strands are colored corresponding to the way they pair up in the structure, yellow nearest the central hairpin, then skyblue, then pink, then green.  View1 matches Fig. 5.23, while View2 is from one edge of the beta barrel.  Animate to see the structure built up in pairs, two strands at a time, out from the central hairpin.  (from PDB file 1HGF)
@multibin 3 
@zoom 1.13 
@zslab 260 
@center 9.600 73.527 23.062 
@matrix 
-0.127237 -0.956466 -0.262642 0.393147 0.194472 -0.898674 0.910629 -0.217602 0.351289 
@2zoom 1.13 
@2zslab 240 
@2center 11.000 76.783 21.637 
@2matrix 
-0.082005 -0.994684 -0.062279 -0.785887 0.102967 -0.609736 0.612908 -0.001057 -0.790153 
@group {hemagglutin} animate
@subgroup dominant {loops}
@vectorlist {lp -4} color= white 
{ca leu a 118}P 18.477 64.295 33.613
{ca glu a 119}20.318 67.255 35.354
{ca gly a 124}P 16.213 82.937 32.119
{ca phe a 125}14.444 83.004 28.756
{ca thr a 126}12.46 86.207 28.357
{ca trp a 127}9.285 85.78 26.329
{ca thr a 128}7.874 89.332 25.823
{ca gly a 129}4.279 89.775 24.729
{ca val a 130}2.839 86.276 25.109
{ca thr a 131}1.317 84.457 28.082
{ca gln a 132}3.61 81.916 29.792
{ca asn a 133}2.878 78.725 31.723
{ca gly a 134}-0.129 77.462 29.8
{ca gly a 135}-1.382 74.156 31.17
{ca ser a 136}-4.104 71.675 30.401
{ca asn a 137}-6.558 69.422 32.006
{ca ala a 138}-5. 66.43 30.285
{ca cys a 139}-1.883 67.114 32.364
{ca lys a 140}-3.267 67.595 35.821
{ca arg a 141}-0.644 68.816 38.255
{ca gly a 142}-2.089 68.158 41.64
{ca pro a 143}-5.6 69.736 41.749
{ca gly a 144}-4.896 72.038 38.801
{ca ser a 145}-4.256 71.866 35.172
{ca gly a 146}-0.568 71.594 34.244
{ca phe a 147}1.949 70.66 31.633
{ca phe a 148}5.421 69.069 31.359
{ca ser a 149}7.656 70.498 34.151
{ca arg a 150}10.375 71.229 31.681
@vectorlist {lp -3} color= white 
{ca thr a 155}P -0.107 81.55 24.117
{ca lys a 156}-1.218 85.068 23.038
{ca ser a 157}-1.253 88.066 25.303
{ca gly a 158}-4.441 90.088 24.93
{ca ser a 159}-4.864 90.148 21.195
{ca thr a 160}-1.429 89.469 19.81
{ca tyr a 161}1.295 86.921 19.565
{ca pro a 162}4.418 88.858 18.434
{ca val a 163}7.355 87.366 16.62
@vectorlist {lp -2} color= white 
{ca asn a 171}P 29.273 79.923 27.284
{ca asp a 172}30.145 76.933 29.36
{ca asn a 173}32.541 74.272 28.23
{ca phe a 174}29.95 71.493 27.801
@vectorlist {lp -1} color= white 
{ca ser a 186}P -7.339 70.592 16.189
{ca thr a 187}-9.185 73.41 14.405
{ca asn a 188}-8.29 76.717 12.733
{ca gln a 189}-10.392 78.289 15.474
{ca glu a 190}-8.166 76.746 18.184
{ca gln a 191}-5.154 78.062 16.243
{ca thr a 192}-6.4 81.637 16.177
{ca ser a 193}-7.725 81.521 19.686
{ca leu a 194}-4.352 80.583 21.069
{ca tyr a 195}-1.795 82.005 18.659
{ca val a 196}-3.828 84.601 16.613
{ca gln a 197}-1.906 83.995 13.335
{ca ala a 198}-3.727 81.355 11.289
{ca ser a 199}-0.41 79.564 10.652
{ca gly a 200}2.368 79.446 13.254
@vectorlist {lp 0} color= white 
{ca arg a 207}P 25.478 78.756 13.915
{ca arg a 208}25.709 75.153 12.819
@vectorlist {lp 1} color= white 
{ca pro a 215}P 2.124 73.157 12.833
{ca asn a 216}-0.384 70.75 11.281
{ca ile a 217}-4.061 71.518 11.967
{ca gly a 218}-6.695 68.82 12.021
{ca ser a 219}-8.39 66.313 14.253
{ca arg a 220}-6.579 63.359 15.684
{ca pro a 221}-8.089 60.666 17.964
{ca trp a 222}-9.303 61.825 21.295
{ca val a 223}-6.558 61.212 23.869
{ca arg a 224}-7.201 62.412 27.428
{ca gly a 225}-9.996 64.667 26.197
{ca leu a 226}-7.847 66.284 23.472
{ca ser a 227}-7.476 66.04 19.708
@vectorlist {lp 2} color= white 
{ca pro a 239}P 30.338 75.289 23.675
{ca gly a 240}30.711 78.688 22.184
@vectorlist {lp 3} color= white 
{ca asn a 248}P 5.301 83.211 15.175
{ca gly a 249}2.976 80.995 17.23
{ca asn a 250}2.55 77.405 18.38
@vectorlist {lp 4} color= white 
{ca lys a 259}P 23.499 68.679 30.4
{ca met a 260}25.004 65.966 28.341
@subgroup dominant {beta}
@vectorlist {beta -4} color= sea 
{ca glu a 119}P 20.318 67.255 35.354
{ca phe a 120}18.357 70.274 34.293
{ca ile a 121}19.458 73.851 34.459
{ca thr a 122}16.815 76.559 34.197
{ca glu a 123}17.708 79.484 31.987
{ca gly a 124}16.213 82.937 32.119
{ca arg a 150}P 10.375 71.229 31.681
{ca leu a 151}8.468 72.814 28.78
{ca asn a 152}6.702 76.236 28.748
{ca trp a 153}3.474 76.637 26.714
{ca leu a 154}3.136 80.16 25.388
{ca thr a 155}-0.107 81.55 24.117
@vectorlist {beta -3} color= pink 
{ca val a 163}P 7.355 87.366 16.62
{ca leu a 164}9.437 85.807 19.358
{ca asn a 165}13.147 86.09 18.596
{ca val a 166}15.334 85.135 21.606
{ca thr a 167}18.893 83.893 22.053
{ca met a 168}20.84 81.951 24.653
{ca pro a 169}24.668 81.521 24.228
{ca asn a 170}26.555 78.45 25.211
{ca asn a 171}29.273 79.923 27.284
@vectorlist {beta -2} color= sky 
{ca phe a 174}P 29.95 71.493 27.801
{ca asp a 175}27.147 70.693 25.362
{ca lys a 176}23.626 71.718 26.118
{ca leu a 177}20.594 69.621 25.086
{ca tyr a 178}17.452 71.757 24.644
{ca ile a 179}14.095 69.912 24.29
{ca trp a 180}11.33 72.063 22.707
{ca gly a 181}8.164 71.504 20.661
{ca ile a 182}5.329 72.793 18.546
{ca his a 183}1.546 72.695 19.144
{ca his a 184}-0.612 71.138 16.418
{ca pro a 185}-4.183 72.554 17.043
{ca ser a 186}-7.339 70.592 16.189
@vectorlist {beta -1} color= yellow 
{ca gly a 200}P 2.368 79.446 13.254
{ca arg a 201}6.031 78.594 12.699
{ca val a 202}9.006 77.61 14.879
{ca thr a 203}12.611 77.984 13.691
{ca val a 204}15.362 76.946 16.148
{ca ser a 205}18.926 77.342 15.009
{ca thr a 206}22.51 77.567 16.002
{ca arg a 207}25.478 78.756 13.915
@vectorlist {beta 1} color= yellow 
{ca arg a 208}P 25.709 75.153 12.819
{ca ser a 209}22.084 74.061 12.111
{ca gln a 210}18.424 75.077 11.812
{ca gln a 211}15.008 73.367 12.054
{ca thr a 212}11.807 75.052 10.986
{ca ile a 213}8.635 73.184 11.738
{ca ile a 214}5.153 74.443 10.835
{ca pro a 215}2.124 73.157 12.833
@vectorlist {beta 2} color= sky 
{ca ser a 227}P -7.476 66.04 19.708
{ca ser a 228}-4.465 68.278 19.529
{ca arg a 229}-0.88 67.07 19.833
{ca ile a 230}2.441 68.604 20.559
{ca ser a 231}5.545 67.163 18.798
{ca ile a 232}8.904 67.097 20.632
{ca tyr a 233}12.178 68.188 18.972
{ca trp a 234}15.731 68.545 20.363
{ca thr a 235}18.717 70.807 19.696
{ca ile a 236}22.203 70.273 21.062
{ca val a 237}24.212 73.519 21.401
{ca lys a 238}27.949 73.095 21.559
{ca pro a 239}30.338 75.289 23.675
@vectorlist {beta 3} color= pink 
{ca gly a 240}P 30.711 78.688 22.184
{ca asp a 241}27.632 78.32 19.927
{ca val a 242}24.282 80.036 20.423
{ca leu a 243}20.637 79.096 20.31
{ca val a 244}18.241 81.474 18.524
{ca ile a 245}14.545 80.546 18.935
{ca asn a 246}12.219 82.408 16.575
{ca ser a 247}8.507 81.882 16.416
{ca asn a 248}5.301 83.211 15.175
@vectorlist {beta 4} color= sea 
{ca asn a 250}P 2.55 77.405 18.38
{ca leu a 251}5.922 77.33 20.193
{ca ile a 252}6.239 75.116 23.273
{ca ala a 253}9.416 76.798 24.514
{ca pro a 254}12.309 75.333 26.527
{ca arg a 255}12.91 76.398 30.17
{ca gly a 256}16.685 75.694 30.041
{ca tyr a 257}18.953 72.755 29.199
{ca phe a 258}19.801 69.241 30.211
{ca lys a 259}23.499 68.679 30.4
@group dominant {0 str} animate
@vectorlist {lp0} instance= {lp 0}
@group dominant {str +/-1} animate
@subgroup dominant {pr 1}
@vectorlist {lp0} instance= {lp 0}
@vectorlist {beta-1} instance= {beta -1}
@vectorlist {beta1} instance= {beta 1}
@vectorlist {lp-1} instance= {lp -1}
@vectorlist {lp1} instance= {lp 1}
@group dominant {str +/-2} animate
@subgroup dominant {pr1} instance= {pr 1}
@subgroup dominant {pr 2}
@vectorlist {beta-2} instance= {beta -2}
@vectorlist {beta2} instance= {beta 2}
@vectorlist {lp-2} instance= {lp -2}
@vectorlist {lp2} instance= {lp 2}
@group dominant {str +/-3} animate
@subgroup dominant {pr1} instance= {pr 1}
@subgroup dominant {pr2} instance= {pr 2}
@subgroup dominant {pr 3}
@vectorlist {beta-3} instance= {beta -3}
@vectorlist {beta3} instance= {beta 3}
@vectorlist {lp-3} instance= {lp -3}
@vectorlist {lp3} instance= {lp 3}
@group dominant {str +/-4} animate
@subgroup dominant {pr1} instance= {pr 1}
@subgroup dominant {pr2} instance= {pr 2}
@subgroup dominant {pr3} instance= {pr 3}
@subgroup dominant {pr 4}
@vectorlist {beta-4} instance= {beta -4}
@vectorlist {beta4} instance= {beta 4}
@vectorlist {lp-4} instance= {lp -4}
@vectorlist {lp4} instance= {lp 4}